Fish the ChIPs

Download

You can download the pipeline.

Mac OS X [binaries]


Click on the link below to download a self-installing package for your Mac machine:

Download for Lion (Mac OS X 10.7)

Download for Snow Leopard (Mac OS X 10.6)

This includes all the required tools and a graphical user interface that can be used to perform complete analysis without any particular computational skill.

Linux and other Unix-like systems [sources]

Download


Links to third-party tools included in the pipeline:

Staden package
http://staden.sourceforge.net/

SRA Toolkit
http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software

FastQC
http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/

Bowtie
http://bowtie-bio.sourceforge.net/

MACS
http://liulab.dfci.harvard.edu/MACS/

wigToBigWig
http://hgdownload.cse.ucsc.edu/admin/exe/

IGVtools
http://www.broadinstitute.org/igv/igvtools/